Issues

• CellTrek on other spatial data, like cosmx SMI data or stereo-seq data.

  navinlabcode/CellTrek#46 · Filter by author admirealll opened on May 29, 2025

• Single cell data and spatial data matching requirement

  navinlabcode/CellTrek#44 · Filter by author Chrisdoan9 opened on Dec 3, 2024

• Using Celltrek on non-matching data ST and SC data.

  navinlabcode/CellTrek#42 · Filter by author Dillon214 opened on May 27, 2024

• [Question] Is it possible to superimpose a network on spatial image?

  navinlabcode/CellTrek#41 · Filter by author MatteoRiva95 opened on May 16, 2024

• Error: package or namespace load failed for ‘CellTrek’

  navinlabcode/CellTrek#40 · Filter by author Jia-Shen-1212 opened on Mar 26, 2024

• Error in rownames(st_data[[st_assay]]@data) : no slot of name "data" for this object of class "Assay5", Possible Seurat v5.0 error

  navinlabcode/CellTrek#39 · Filter by author tsoruu opened on Dec 28, 2023
  8

• ERROR

  navinlabcode/CellTrek#38 · Filter by author haitianyisee opened on Dec 16, 2023
  1

• celltrek_vis Error

  navinlabcode/CellTrek#37 · Filter by author a365485265 opened on Dec 13, 2023

• Errors in CellTrek::traint on example data from README

  navinlabcode/CellTrek#36 · Filter by author katherine-benjamin opened on Nov 3, 2023
  4

• Customized Plot

  navinlabcode/CellTrek#34 · Filter by author awesomedeer opened on Sep 22, 2023

• Normalization methods

  navinlabcode/CellTrek#33 · Filter by author awesomedeer opened on Sep 21, 2023

• Request for cell type annotation of mouse kidney and DCIS1 datasets

  navinlabcode/CellTrek#32 · Filter by author shiy-shiy opened on Sep 21, 2023

• Dealing with spatial data with merged samples

  navinlabcode/CellTrek#31 · Filter by author Kennyluo4 opened on Jul 26, 2023

• Celltrek output to spot and cell mapping

  navinlabcode/CellTrek#30 · Filter by author smk5g5 opened on Jul 5, 2023

• "Celltrek"_Simualtion dataset

  navinlabcode/CellTrek#29 · Filter by author 13198910213 opened on May 15, 2023

• lack of single-cell transcriptome data from the same patient

  navinlabcode/CellTrek#28 · Filter by author ozuoano opened on May 6, 2023
  1

• keep raw data in celltrek object

  navinlabcode/CellTrek#25 · Filter by author kguion1 opened on Oct 13, 2022
  1

• celltrek_vis error

  navinlabcode/CellTrek#24 · Filter by author wang0430 opened on Oct 12, 2022
  1

• Error while running CellTrek:celltrek function

  navinlabcode/CellTrek#23 · Filter by author pratapstat opened on Oct 4, 2022
  1

• Error: 'DT_boot_mst' is not an exported object from 'namespace:CellTrek'

  navinlabcode/CellTrek#22 · Filter by author kaizen89 opened on Sep 17, 2022

• Assigning all single cells

  navinlabcode/CellTrek#21 · Filter by author cadyyuheng opened on Aug 28, 2022
  1

• clarification on overall method

  navinlabcode/CellTrek#20 · Filter by author kguion1 opened on Aug 12, 2022
  2

• Error: invalid character indexing

  navinlabcode/CellTrek#19 · Filter by author AteeqMKhaliq opened on Aug 2, 2022
  1

• Question about Supplementary Figure 7e

  navinlabcode/CellTrek#16 · Filter by author Chuang1118 opened on Jul 5, 2022
  1

• How to keep all the metadata from the seurat traint object after running CellTrek::celltrek()

  navinlabcode/CellTrek#15 · Filter by author AF788 opened on Jul 1, 2022
  1