Issues

• How to import dataset from collection?

  stemangiola/CuratedAtlasQueryR#151 · Filter by author YXC33 opened on Aug 19, 2024
  7

• could not run pseudobulk on imported data

  stemangiola/CuratedAtlasQueryR#149 · Filter by author cynthialiu opened on Jul 11, 2024
  2

• pseuodbulk file not found in the cloud - 3fe53a40-38ff-4f25-b33b-e4d60f2289ef

  stemangiola/CuratedAtlasQueryR#146 · Filter by author stemangiola opened on Jun 10, 2024
  1

• add BiorXIV reference in CITATION file and in every function

  stemangiola/CuratedAtlasQueryR#145 · Filter by author stemangiola opened on Jun 8, 2024

• cache for pseudobulk same as for single cell?

  stemangiola/CuratedAtlasQueryR#144 · Filter by author stemangiola opened on Jun 8, 2024
  2

• Add citation file

  stemangiola/CuratedAtlasQueryR#141 · Filter by author stemangiola opened on May 13, 2024

• add get_pseudobulk API

  stemangiola/CuratedAtlasQueryR#136 · Filter by author stemangiola opened on Apr 12, 2024
  4

• take intersection of genes in the get_single_cell_experiment function

  stemangiola/CuratedAtlasQueryR#132 · Filter by author stemangiola opened on Mar 15, 2024

• Update the readme to reference the Bioconductor publication

  stemangiola/CuratedAtlasQueryR#126 · Filter by author multimeric opened on Jan 19, 2024

• Trying to use the package: accessing the METADATA_URL

  stemangiola/CuratedAtlasQueryR#125 · Filter by author shivUSF opened on Jan 19, 2024
  1

• file_id_db=="e427efe71e8e94de5b3e48eb98236323" fails

  stemangiola/CuratedAtlasQueryR#124 · Filter by author stemangiola opened on Jan 17, 2024
  2

• duplicate 'row.names' are not allowed

  stemangiola/CuratedAtlasQueryR#123 · Filter by author stemangiola opened on Jan 10, 2024
  6

• Add a download-nly function, for deploying the database without compiling a 30M cell SingleCellExperiment

  stemangiola/CuratedAtlasQueryR#120 · Filter by author stemangiola opened on Oct 27, 2023

• correct typo in tissue harmonised

  stemangiola/CuratedAtlasQueryR#106 · Filter by author stemangiola opened on Mar 23, 2023

• Some studies of the Human Cell Atlas cannot be found

  stemangiola/CuratedAtlasQueryR#104 · Filter by author KoppGergely opened on Mar 21, 2023
  3

• Minor repo/website feedback

  stemangiola/CuratedAtlasQueryR#90 · Filter by author multimeric opened on Feb 22, 2023
  5

• plan forward

  stemangiola/CuratedAtlasQueryR#85 · Filter by author stemangiola opened on Feb 21, 2023

• add disease to sample same, as there are 24 samples with multiple diseases

  stemangiola/CuratedAtlasQueryR#84 · Filter by author stemangiola opened on Feb 21, 2023
  

• Database update process

  stemangiola/CuratedAtlasQueryR#74 · Filter by author multimeric opened on Feb 16, 2023
  3

• Separate the HCA content from this API repository

  stemangiola/CuratedAtlasQueryR#69 · Filter by author stemangiola opened on Feb 12, 2023
  

• Create GIF video for the API usage

  stemangiola/CuratedAtlasQueryR#55 · Filter by author stemangiola opened on Feb 8, 2023

• Explanation of the DB versions

  stemangiola/CuratedAtlasQueryR#43 · Filter by author stemangiola opened on Jan 25, 2023

• Build Figure 3: query interface, framework pipeline, and technical benchmark

  stemangiola/CuratedAtlasQueryR#26 · Filter by author stemangiola opened on Nov 3, 2022
  2

  

• integrate cell types and reclassify

  stemangiola/CuratedAtlasQueryR#13 · Filter by author stemangiola opened on Oct 8, 2022
  13

  

• Converting makeflow workflow to a more mainstream workflow

  stemangiola/CuratedAtlasQueryR#8 · Filter by author stemangiola opened on Sep 20, 2022
  1