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@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

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  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 127 28

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 268 40

Repositories

Showing 10 of 121 repositories
  • DeepEST Public
    BorgwardtLab/DeepEST's past year of commit activity
    Python 10 4 0 0 Updated Sep 7, 2026
  • bioverse Public
    BorgwardtLab/bioverse's past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Aug 11, 2026
  • Gelato Public

    Code and Data for the paper: "Gelato: Graph Edit Distance via Autoregressive Neural Combinatorial Optimization" (ICLR 2026)

    BorgwardtLab/Gelato's past year of commit activity
    Python 5 MIT 1 0 0 Updated Jun 8, 2026
  • rnaglib-experiments Public
    BorgwardtLab/rnaglib-experiments's past year of commit activity
    Python 4 0 0 0 Updated Jun 5, 2026
  • TEDBench Public

    Protein Fold Classification at Scale: Benchmarking and Pretraining (ICML 2026 oral)

    BorgwardtLab/TEDBench's past year of commit activity
    Python 20 BSD-3-Clause 0 1 0 Updated May 24, 2026
  • CellPick Public

    An interactive cell selection tool for spatial omics

    BorgwardtLab/CellPick's past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated May 22, 2026
  • polygraph-benchmark Public

    Benchmarking framework for graph generative models (ICLR 2026)

    BorgwardtLab/polygraph-benchmark's past year of commit activity
    Python 12 BSD-3-Clause 0 0 0 Updated Apr 30, 2026
  • ed_outcome_prediction_benchmark Public
    BorgwardtLab/ed_outcome_prediction_benchmark's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 13, 2026
  • Human_scDVP_Analysis Public
    BorgwardtLab/Human_scDVP_Analysis's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 30, 2025
  • graph-kernels Public

    Graph kernels

    BorgwardtLab/graph-kernels's past year of commit activity
    C++ 56 GPL-2.0 24 0 0 Updated Dec 3, 2025
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