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@CellProfiling

CellProfiling

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  1. HPA-Cell-Segmentation HPA-Cell-Segmentation Public

    Python 96 26

  2. HPA-competition-solutions HPA-competition-solutions Public

    Team original solutions for the Human Protein Atlas image classification competition

    Jupyter Notebook 61 21

  3. ProtiCelli ProtiCelli Public

    Group-wise release of ProtiCelli, including core code deveplopment.

    Python 28 7

  4. subcell-embed subcell-embed Public

    Codebase for training the SubCell models

    Python 25 3

  5. pipex pipex Public

    A pipeline to transform images into valuable analysis items

    Python 19 2

  6. subcell-analysis subcell-analysis Public

    Jupyter Notebook 18 1

Repositories

Showing 10 of 78 repositories
  • cam_acq Public

    Python project to control microscope through client-server program.

    CellProfiling/cam_acq's past year of commit activity
    Python 6 Apache-2.0 0 1 7 Updated Oct 6, 2026
  • subcell-embed Public

    Codebase for training the SubCell models

    CellProfiling/subcell-embed's past year of commit activity
    Python 25 MIT 3 0 0 Updated Oct 5, 2026
  • camacq-plugins Public

    Plugins for camacq

    CellProfiling/camacq-plugins's past year of commit activity
    Python 0 Apache-2.0 0 0 14 Updated Oct 4, 2026
  • pipex Public

    A pipeline to transform images into valuable analysis items

    CellProfiling/pipex's past year of commit activity
    Python 19 MIT 2 0 0 Updated Sep 21, 2026
  • PUPS_Composite_JPG_Test Public
    CellProfiling/PUPS_Composite_JPG_Test's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 17, 2026
  • ProtiCelli Public

    Group-wise release of ProtiCelli, including core code deveplopment.

    CellProfiling/ProtiCelli's past year of commit activity
    Python 28 GPL-3.0 7 0 0 Updated Sep 15, 2026
  • hpa-tissue-ihc-dataset Public
    CellProfiling/hpa-tissue-ihc-dataset's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 7, 2026
  • HPACellSegmentatorPortable Public

    Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries

    CellProfiling/HPACellSegmentatorPortable's past year of commit activity
    Python 0 1 0 1 Updated Aug 14, 2026
  • CellposeSegmentatorPortable Public

    Simple wrapper that runs Cellpose segmentation model in a convenient way. It can run nuclei, nuclei + cytoplasm or nuclei + 2 x cytoplasm [combined] segmentation over grayscale images.

    CellProfiling/CellposeSegmentatorPortable's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 14, 2026
  • seq2loc_benchmark Public

    Code for "A comprehensive benchmark of sequence-based subcellular localization predictors for human proteins"

    CellProfiling/seq2loc_benchmark's past year of commit activity
    Jupyter Notebook 5 MIT 0 1 0 Updated Jul 30, 2026
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