Issues

• Stage modularity, round 2

  EdinburghGenomics/Analysis-Driver#418 · Filter by author mwhamgenomics opened on Sep 16, 2019

• See if VQSR results can be improved or remove comment in GATK4 pipeline

  EdinburghGenomics/Analysis-Driver#403 · Filter by author tcezard opened on Jun 12, 2019

• Dragen updates

  EdinburghGenomics/Analysis-Driver#401 · Filter by author mwhamgenomics opened on May 28, 2019

• Unmarked sample that have been successfully processed

  EdinburghGenomics/Analysis-Driver#397 · Filter by author tcezard opened on May 23, 2019
  

• Separate Integration test references from the production ones

  enhancement
  EdinburghGenomics/Analysis-Driver#339 · Filter by author tcezard opened on Jun 14, 2018

• Resumable stages

  enhancement
  EdinburghGenomics/Analysis-Driver#328 · Filter by author tcezard opened on May 14, 2018

• Scanner reliability

  enhancementnew feature
  EdinburghGenomics/Analysis-Driver#325 · Filter by author mwhamgenomics opened on Mar 22, 2018
  1

• Evaluate and possibly implement standardised pipeline

  EdinburghGenomics/Analysis-Driver#324 · Filter by author tcezard opened on Feb 19, 2018

• Integration test: Create new repo for integretion test datasets.

  new feature
  EdinburghGenomics/Analysis-Driver#294 · Filter by author tcezard opened on Nov 20, 2017
  2

• Generic DataOutput

  EdinburghGenomics/Analysis-Driver#274 · Filter by author katieemelianova opened on Aug 16, 2017
  1

• Split Dataset and Pipeline run data

  EdinburghGenomics/Analysis-Driver#249 · Filter by author mwhamgenomics opened on May 16, 2017

• Add validation step at the end of the Run processing

  EdinburghGenomics/Analysis-Driver#209 · Filter by author tcezard opened on Dec 6, 2016
  1