Historical computational research archive of Daniela Lopes Cardoso.
This profile is an archive of earlier computational and research projects.
My current professional GitHub profile is DLopesCardoso.
This account preserves selected earlier bioinformatics and computational biology projects and their research provenance.
Computational analysis associated with the 2017 PLOS ONE study:
Lopes Cardoso D, Sharpe C (2017).
Relating protein functional diversity to cell type number identifies genes
that determine dynamic aspects of chromatin organisation as potential
contributors to organismal complexity.
PLOS ONE 12(9): e0185409.
The original Python/Ensembl REST analysis and a later R/BioMart redevelopment are preserved in:
The 2017 publication originally referenced this GenDataPro/GenDataPro
repository as the location of the analysis code. The files have since been
reorganised into the dedicated repository above while their original Git
history remains preserved here.
An early Python prototype exploring sequence changes capable of generating candidate splice-donor motifs.
This account is retained as a historical research archive.
Current research software and actively developed bioinformatics projects are maintained separately.