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@SWC-Advanced-Microscopy

SWC Advanced Microscopy Facility

README.md

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  1. MATLAB_DAQmx_examples MATLAB_DAQmx_examples Public

    DAQmx Examples using MATLAB

    MATLAB 31 12

  2. multiphoton-qc multiphoton-qc Public

    Multi-photon quality control tools

    MATLAB 38 7

  3. StitchIt StitchIt Public

    Stitching of large tiled datasets

    MATLAB 23 8

  4. Python_DAQmx_examples Python_DAQmx_examples Public

    DAQmx Examples using Python with NI's nidaqmx package

    Python 16 4

  5. BakingTray BakingTray Public

    Serial-section automated anatomy extension for ScanImage

    MATLAB 18 5

  6. SimpleMScanner SimpleMScanner Public

    Simple MATLAB scanning software for demo purposes

    MATLAB 6 2

Repositories

Showing 10 of 33 repositories
  • StitchIt Public

    Stitching of large tiled datasets

    SWC-Advanced-Microscopy/StitchIt's past year of commit activity
    MATLAB 23 LGPL-3.0 8 74 1 Updated Sep 28, 2026
  • BakingTray Public

    Serial-section automated anatomy extension for ScanImage

    SWC-Advanced-Microscopy/BakingTray's past year of commit activity
    MATLAB 18 LGPL-3.0 5 158 0 Updated Sep 28, 2026
  • BrainSaw_Log_Analysis Public

    Log analysis for the BakingTray and BrainSaw methods paper

    SWC-Advanced-Microscopy/BrainSaw_Log_Analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 27, 2026
  • swc-advanced-microscopy.github.io Public

    facility webpage

    SWC-Advanced-Microscopy/swc-advanced-microscopy.github.io's past year of commit activity
    HTML 0 0 0 0 Updated Sep 24, 2026
  • multiphoton-qc Public

    Multi-photon quality control tools

    SWC-Advanced-Microscopy/multiphoton-qc's past year of commit activity
    MATLAB 38 LGPL-3.0 7 52 0 Updated Sep 15, 2026
  • brainsaw_channel_chooser Public

    Choose correct excitation wavelength and emission channels for BrainSaw

    SWC-Advanced-Microscopy/brainsaw_channel_chooser's past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 13, 2026
  • electronics_basics Public
    SWC-Advanced-Microscopy/electronics_basics's past year of commit activity
    0 0 0 0 Updated Aug 7, 2026
  • Brainsaw_CAD Public

    CAD models for key BrainSaw parts

    SWC-Advanced-Microscopy/Brainsaw_CAD's past year of commit activity
    0 MIT 0 0 0 Updated Aug 6, 2026
  • .github Public

    prettifier for AMF org GitHub

    SWC-Advanced-Microscopy/.github's past year of commit activity
    0 0 0 0 Updated Aug 4, 2026
  • 2p_crosssection_viewer Public

    Webpage with interactive plot of commonly used 2p dye cross-sections

    SWC-Advanced-Microscopy/2p_crosssection_viewer's past year of commit activity
    HTML 1 Apache-2.0 0 0 0 Updated Aug 4, 2026
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