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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 268

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • Rho-core Public

    Generic Rho Host, operation journal, public protocol and SDK

    YuLab-SMU/Rho-core's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 2, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 2, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    Rust 33 AGPL-3.0 10 15 3 Updated Oct 2, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 1, 2026
  • MicrobiomeProfiler Public

    🦠 A shiny package for microbiome functional enrichment analysis

    YuLab-SMU/MicrobiomeProfiler's past year of commit activity
    R 42 8 0 0 Updated Oct 1, 2026
  • biomedical-knowledge-mining-book Public

    📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 96 30 0 0 Updated Sep 28, 2026
  • meshes Public

    🩺 MeSH Enrichment and Semantic analyses

    YuLab-SMU/meshes's past year of commit activity
    R 13 4 0 0 Updated Sep 28, 2026
  • ivolcano Public

    Interactive Volcano Plot

    YuLab-SMU/ivolcano's past year of commit activity
    R 7 2 0 0 Updated Sep 28, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io's past year of commit activity
    HTML 14 6 0 0 Updated Sep 28, 2026
  • ggimage Public

    🎨 Use Images in ggplot2

    YuLab-SMU/ggimage's past year of commit activity
    R 179 36 5 0 Updated Sep 27, 2026