Skip to content
@cbib

Centre de Bioinformatique de Bordeaux

Popular repositories Loading

  1. TrialMatchAI TrialMatchAI Public

    TrialMatchAI leverages large language models to streamline clinical trial matching by evaluating patient-specific clinical characteristics against trial eligibility criteria and generating relevant…

    Python 38 18

  2. Seurat-Integrate Seurat-Integrate Public

    R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an integration benchmarking toolkit.

    R 36 3

  3. DeepSpot DeepSpot Public

    DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images

    Python 15 4

  4. MIX MIX Public

    MIX: Combining multiple assemblies from NGS data

    Python 13 6

  5. virhunter virhunter Public

    Deep Learning method for novel virus detection in sequencing data

    Python 10 3

  6. MICADo MICADo Public

    Looking for mutations in PacBio cancer data: an alignment-free method

    Python 8 2

Repositories

Showing 10 of 29 repositories
  • cbib/stsm_integration's past year of commit activity
    Python 0 0 0 0 Updated Oct 8, 2026
  • SpaceBlocks Public
    cbib/SpaceBlocks's past year of commit activity
    Python 5 MIT 1 0 0 Updated Oct 7, 2026
  • DIMet Public

    Differential analysis of targeted Isotope-labeled Metabolomics data

    cbib/DIMet's past year of commit activity
    Python 5 MIT 2 5 1 Updated Oct 6, 2026
  • TrialMatchAI Public

    TrialMatchAI leverages large language models to streamline clinical trial matching by evaluating patient-specific clinical characteristics against trial eligibility criteria and generating relevant, ranked trial recommendations.

    cbib/TrialMatchAI's past year of commit activity
    Python 38 18 0 2 Updated Oct 3, 2026
  • triframe Public
    cbib/triframe's past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2026
  • cbib/beta_vae_lnclassifier's past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2026
  • uncertainty_aware_lnclassifier Public

    A Snakemake pipeline benchmarking transcript classification tools

    cbib/uncertainty_aware_lnclassifier's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 29, 2026
  • nbd_extraction_pipeline Public

    About Snakemake pipeline to extract Non-B DNA motif features using gfa, G4Discovery and custom scripts.

    cbib/nbd_extraction_pipeline's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 29, 2026
  • rep_extraction_pipeline Public

    Snakemake pipeline to extract repetitive elements features using Repeatmasker and custom scripts.

    cbib/rep_extraction_pipeline's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 29, 2026
  • COBRA Public

    Multi-omics data integrative web application for plant-virus resistance gene

    HTML 2 3 0 2 Updated Aug 8, 2026

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…