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@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

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  1. regtools regtools Public

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 142 30

  2. GenVisR GenVisR Public

    Genome data visualizations

    R 227 65

  3. pVACtools pVACtools Public

    Python 189 81

  4. VAtools VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    Python 32 14

  5. rnabio.org rnabio.org Public

    website for the rnaseq course

    SCSS 127 44

  6. civic-v2 civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 31 8

Repositories

Showing 10 of 87 repositories
  • griffithlab/docker-pvactools's past year of commit activity
    Python 3 8 0 0 Updated Sep 29, 2026
  • civic-editor-tools Public

    automations to facilitate editor review and issue correction in civicdb

    griffithlab/civic-editor-tools's past year of commit activity
    Python 0 MIT 0 2 0 Updated Sep 29, 2026
  • pVACtools Public
    griffithlab/pVACtools's past year of commit activity
    Python 189 BSD-3-Clause-Clear 81 93 13 Updated Sep 29, 2026
  • civic-pubtator Public

    Version of tmvar working on ARM with detailed instructions and examples

    griffithlab/civic-pubtator's past year of commit activity
    Shell 1 MIT 1 1 0 Updated Sep 28, 2026
  • civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    griffithlab/civic-v2's past year of commit activity
    TypeScript 31 MIT 8 83 46 Updated Sep 28, 2026
  • VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    griffithlab/VAtools's past year of commit activity
    Python 32 MIT 14 0 0 Updated Sep 23, 2026
  • civicpy Public

    A python interface for the CIViC db application

    griffithlab/civicpy's past year of commit activity
    Python 13 MIT 8 32 3 Updated Sep 22, 2026
  • ImmuScope Public Forked from shenlongchen/ImmuScope
    griffithlab/ImmuScope's past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Sep 16, 2026
  • griffithlab/civic-mcp-server's past year of commit activity
    JavaScript 1 2 0 0 Updated Sep 11, 2026
  • civic-docs Public

    Source code for the civicdb.org docs

    griffithlab/civic-docs's past year of commit activity
    5 CC0-1.0 9 22 5 Updated Sep 9, 2026

Most used topics

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