Nextstrain build for SARS-CoV-2
Python 1.4k 408
Pipeline components for real-time phylodynamic analysis
Python 279 137
Web app for visualizing pathogen evolution
JavaScript 312 172
Datasets for https://github.com/nextstrain/nextclade
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Hepatitis C workflows
The Nextstrain website
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Nextstrain build for measles virus
Nextstrain build for avian influenza viruses
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
