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@pharmbio

pharmb.io

Pharmaceutical Bioinformatics research group at Uppsala University

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  1. sciluigi sciluigi Public

    A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

    Python 334 55

  2. bioimg-sciluigi-casestudy bioimg-sciluigi-casestudy Public

    An automated virtual machine setup, containing a use case for running workflows written in SciLuigi

    Python 5 1

  3. robotlab robotlab Public

    Cell painting and imaging with robots

    Python 12 1

  4. plaid plaid Public

    PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

    Jupyter Notebook 20 5

  5. squid squid Public

    Forked from Cephla-Lab/Squid

    C 3

Repositories

Showing 10 of 120 repositories
  • echa-chem-mcp-skill Public

    MCP server and agent skill for ECHA CHEM database

    pharmbio/echa-chem-mcp-skill's past year of commit activity
    Python 2 MIT 0 1 0 Updated Sep 25, 2026
  • chemsafe-agent Public

    AI Agent for Chemical Safety

    pharmbio/chemsafe-agent's past year of commit activity
    Python 3 0 0 0 Updated Sep 24, 2026
  • pharmbio-web Public

    The Static (Hugo) website for pharmb.io

    pharmbio/pharmbio-web's past year of commit activity
    JavaScript 3 7 0 4 Updated Sep 23, 2026
  • pharmbio/cage2_automation's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 23, 2026
  • colopaint3D Public

    Supporting scripts and code for Cell Painting in 3D spheroids

    pharmbio/colopaint3D's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 11, 2026
  • repuragent-web Public

    AI Agent for Drug Repurposing

    pharmbio/repuragent-web's past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Sep 4, 2026
  • repuragent Public

    Multi-agentic AI system for Drug Repurposing

    pharmbio/repuragent's past year of commit activity
    Python 22 3 0 0 Updated Sep 3, 2026
  • sarscov2-phenomics-repurposing Public

    This repository contains code and data associated with the manuscript "Morphological cell profiling for drug repurposing against SARS-CoV-2 infection"

    pharmbio/sarscov2-phenomics-repurposing's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 3, 2026
  • SphereDetect Public

    Implementation of algorithm to automatically detect spheroid base Z plane in multiwell microscopy.

    pharmbio/SphereDetect's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 19, 2026
  • big-data_course Public

    Material for the Big Data in life science course

    pharmbio/big-data_course's past year of commit activity
    TeX 4 3 0 0 Updated Aug 17, 2026