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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 277

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 512 115

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 411 72

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 432 78

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 363 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 273 repositories
  • sckitflow Public
    theislab/sckitflow's past year of commit activity
    Python 7 BSD-3-Clause 1 25 (2 issues need help) 7 Updated Sep 28, 2026
  • scfit Public
    theislab/scfit's past year of commit activity
    Python 2 MIT 0 2 3 Updated Sep 28, 2026
  • scPDAC Public
    theislab/scPDAC's past year of commit activity
    Python 4 MIT 1 0 1 Updated Sep 28, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Sep 28, 2026
  • spatialdata-db Public
    theislab/spatialdata-db's past year of commit activity
    Jupyter Notebook 12 BSD-3-Clause 1 26 5 Updated Sep 28, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI's past year of commit activity
    Python 82 BSD-3-Clause 6 5 4 Updated Sep 28, 2026
  • spatialdata-db-curation Public

    Structure to manage and formalise data submission for SpatialData-DB

    theislab/spatialdata-db-curation's past year of commit activity
    Python 0 0 1 0 Updated Sep 27, 2026
  • geome Public
    theislab/geome's past year of commit activity
    Python 17 MIT 4 7 1 Updated Sep 27, 2026
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices's past year of commit activity
    Jupyter Notebook 1,272 277 43 4 Updated Sep 26, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink's past year of commit activity
    Python 21 Apache-2.0 6 5 2 Updated Sep 24, 2026
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